Sample Set Annotation Tool: T cell responses to H1N1v and a longitudinal study of seasonal influenza vaccination

Study Design
Assay
Sample Info
Files
Info
Samples
Group Sets
Analysis

Purpose

Systems biology approach to examine effects of seasonal flu vaccination in adults of different ages on gene expression, cytokine stimulation and serum cytokines with parameters such as immune senescence to uncover new markers and mechanisms behind failure of immune function in many older people.

Hypothesis

Experimental Design

Total RNA was extracted from whole-blood lysates obtained from individuals immediately prior to vaccination against seasonal influenza, followed by depletion of globin messenger RNA. The goal was to evaluate potential gene expression signatures at Day 0 associated with immune senescence.

Experimental Variables

Controls

Methods

Additional Information

Expected Samples:

75 Samples Loaded: 75

Species

Human (Homo sapiens)

Sample Source

Whole Blood

Disease

Influenza vaccine

Treatment Protocol

Growth Protocol

Extraction Protocol

Storage Conditions

Sample Set Spreadsheet

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Samples Preview

Sample ID	!Sample Title	group	race	vaccine
GSM1422001	Baseline (day 0) 5920666012_A	Fluzone single-dose syringe	White	Baseline- D0
GSM1422002	Baseline (day 0) 5920711008_D	Fluzone single-dose syringe	White	Baseline- D0
GSM1422003	Baseline (day 0) 5920834001_J	Fluzone multi-dose vial	White	Baseline- D0
GSM1422004	Baseline (day 0) 5920711008_H	Fluzone single-dose syringe	White	Baseline- D0
GSM1422005	Baseline (day 0) 5920666014_D	Fluzone single-dose syringe	White	Baseline- D0

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File
sampleset4000034_sampleannotations_Group.csv Sample Set Spreadsheet
sampleset4000034_sampleannotations_Group.csv Sample Set Spreadsheet

Samples Viewer / Editor

All fields are editable except the "Sample ID" column. To edit a cell, click within the cell. To edit a "date" cell, click on the calendar icon. To cancel an edit, press the ESC key.

Sample ID	!Sample Title	Group	Race	Vaccine	Sex
GSM1422001	Baseline (day 0) 5920666012_A	Fluzone single-dose syringe	White	Baseline- D0	female
GSM1422002	Baseline (day 0) 5920711008_D	Fluzone single-dose syringe	White	Baseline- D0	female
GSM1422003	Baseline (day 0) 5920834001_J	Fluzone multi-dose vial	White	Baseline- D0	female
GSM1422004	Baseline (day 0) 5920711008_H	Fluzone single-dose syringe	White	Baseline- D0	male
GSM1422005	Baseline (day 0) 5920666014_D	Fluzone single-dose syringe	White	Baseline- D0	female
GSM1422006	Baseline (day 0) 5920711008_G	Fluzone single-dose syringe	White	Baseline- D0	male
GSM1422007	Baseline (day 0) 5920666011_G	Fluzone single-dose syringe	White	Baseline- D0	female
GSM1422008	Baseline (day 0) 5920834001_I	Fluzone single-dose syringe	White	Baseline- D0	male
GSM1422009	Baseline (day 0) 5920666013_I	Fluzone single-dose syringe	White	Baseline- D0	male
GSM1422010	Baseline (day 0) 5920666012_B	Fluzone single-dose syringe	White	Baseline- D0	female
GSM1422011	Baseline (day 0) 5920834001_D	Fluzone single-dose syringe	White	Baseline- D0	female
GSM1422012	Baseline (day 0) 5920666013_L	Fluzone single-dose syringe	White	Baseline- D0	female
GSM1422013	Baseline (day 0) 5920834001_F	Fluzone single-dose syringe	White	Baseline- D0	male
GSM1422014	Baseline (day 0) 5920834001_A	Fluzone single-dose syringe	White	Baseline- D0	male
GSM1422015	Baseline (day 0) 5920666012_K	Fluzone single-dose syringe	White	Baseline- D0	male
GSM1422016	Baseline (day 0) 5920666014_J	Fluzone multi-dose vial	White	Baseline- D0	female
GSM1422017	Baseline (day 0) 5920666013_C	Fluzone single-dose syringe	Asian	Baseline- D0	male
GSM1422018	Baseline (day 0) 5920666013_G	Fluzone single-dose syringe	White	Baseline- D0	female
GSM1422019	Baseline (day 0) 5920666011_I	Fluzone single-dose syringe	White	Baseline- D0	female
GSM1422020	Baseline (day 0) 5920666014_H	Fluzone single-dose syringe	White	Baseline- D0	female
GSM1422021	Baseline (day 0) 5920666012_D	Fluzone single-dose syringe	White	Baseline- D0	female
GSM1422022	Baseline (day 0) 5920666013_F	Fluzone single-dose syringe	White	Baseline- D0	female
GSM1422023	Baseline (day 0) 5920711019_C	Fluzone single-dose syringe	Asian	Baseline- D0	female
GSM1422024	Baseline (day 0) 5920666014_B	Fluzone single-dose syringe	White	Baseline- D0	female
GSM1422025	Baseline (day 0) 5920711008_L	Fluzone single-dose syringe	White	Baseline- D0	male
GSM1422026	Baseline (day 0) 5920834001_H	Fluzone single-dose syringe	White	Baseline- D0	male
GSM1422027	Baseline (day 0) 5920711008_K	Fluzone single-dose syringe	White	Baseline- D0	female
GSM1422028	Baseline (day 0) 5920711019_F	Fluzone single-dose syringe	White	Baseline- D0	male
GSM1422029	Baseline (day 0) 5920666012_J	Fluzone single-dose syringe	White	Baseline- D0	male
GSM1422030	Baseline (day 0) 5920711019_G	Fluzone single-dose syringe	White	Baseline- D0	female
GSM1422031	Baseline (day 0) 5920711008_E	Fluzone single-dose syringe	White	Baseline- D0	male
GSM1422032	Baseline (day 0) 5920666011_H	Fluzone single-dose syringe	White	Baseline- D0	male
GSM1422033	Baseline (day 0) 5920711019_B	Fluzone single-dose syringe	White	Baseline- D0	female
GSM1422034	Baseline (day 0) 5920666014_I	Fluzone single-dose syringe	Other	Baseline- D0	female
GSM1422035	Baseline (day 0) 5920711019_K	Fluzone single-dose syringe	White	Baseline- D0	male
GSM1422036	Baseline (day 0) 5920711008_A	Fluzone single-dose syringe	White	Baseline- D0	female
GSM1422037	Baseline (day 0) 5920666013_K	Fluzone single-dose syringe	White	Baseline- D0	female
GSM1422038	Baseline (day 0) 5920711019_E	Fluzone single-dose syringe	Asian	Baseline- D0	female
GSM1422039	Baseline (day 0) 5920711008_C	Fluzone single-dose syringe	Other	Baseline- D0	female
GSM1422040	Baseline (day 0) 5920834001_B	Fluzone single-dose syringe	White	Baseline- D0	female
GSM1422041	Baseline (day 0) 5920666012_H	Fluzone single-dose syringe	White	Baseline- D0	male
GSM1422042	Baseline (day 0) 5920711008_J	Fluzone single-dose syringe	White	Baseline- D0	male
GSM1422043	Baseline (day 0) 5920666012_L	Fluzone single-dose syringe	White	Baseline- D0	female
GSM1422044	Baseline (day 0) 5920666013_A	Fluzone single-dose syringe	White	Baseline- D0	female
GSM1422045	Baseline (day 0) 5920666014_E	Fluzone single-dose syringe	White	Baseline- D0	female
GSM1422046	Baseline (day 0) 5920834001_E	Fluzone single-dose syringe	White	Baseline- D0	male
GSM1422047	Baseline (day 0) 5920666014_A	Fluzone single-dose syringe	White	Baseline- D0	male
GSM1422048	Baseline (day 0) 5920711019_J	Fluzone single-dose syringe	Other	Baseline- D0	male
GSM1422049	Baseline (day 0) 5920666014_L	Fluzone single-dose syringe	Asian	Baseline- D0	female
GSM1422050	Baseline (day 0) 5920666011_K	Fluzone single-dose syringe	Asian	Baseline- D0	female
GSM1422051	Baseline (day 0) 5920666014_F	Fluzone single-dose syringe	White	Baseline- D0	female
GSM1422052	Baseline (day 0) 5920711019_H	Fluzone single-dose syringe	White	Baseline- D0	male
GSM1422053	Baseline (day 0) 5920711019_L	Fluzone single-dose syringe	White	Baseline- D0	male
GSM1422054	Baseline (day 0) 5920666013_J	Fluzone single-dose syringe	White	Baseline- D0	female
GSM1422055	Baseline (day 0) 5920666012_G	Fluzone single-dose syringe	White	Baseline- D0	female
GSM1422056	Baseline (day 0) 5920711019_D	Fluzone single-dose syringe	White	Baseline- D0	female
GSM1422057	Baseline (day 0) 5920666013_H	Fluzone single-dose syringe	White	Baseline- D0	male
GSM1422058	Baseline (day 0) 5920666012_C	Fluzone single-dose syringe	White	Baseline- D0	female
GSM1422059	Baseline (day 0) 5920666013_E	Fluzone single-dose syringe	White	Baseline- D0	male
GSM1422060	Baseline (day 0) 5920666011_L	Fluzone single-dose syringe	White	Baseline- D0	male
GSM1422061	Baseline (day 0) 5920666014_C	Fluzone single-dose syringe	White	Baseline- D0	female
GSM1422062	Baseline (day 0) 5920711008_I	Fluzone single-dose syringe	White	Baseline- D0	female
GSM1422063	Baseline (day 0) 5920834001_G	Fluzone single-dose syringe	White	Baseline- D0	male
GSM1422064	Baseline (day 0) 5920666012_I	Fluzone single-dose syringe	White	Baseline- D0	male
GSM1422065	Baseline (day 0) 5920711019_A	Fluzone single-dose syringe	White	Baseline- D0	female
GSM1422066	Baseline (day 0) 5920834001_C	Fluzone single-dose syringe	White	Baseline- D0	female
GSM1422067	Baseline (day 0) 5920666013_B	Fluzone single-dose syringe	White	Baseline- D0	female
GSM1422068	Baseline (day 0) 5920711008_B	Fluzone single-dose syringe	White	Baseline- D0	male
GSM1422069	Baseline (day 0) 5920666014_K	Fluzone single-dose syringe	Other	Baseline- D0	female
GSM1422070	Baseline (day 0) 5920666011_J	Fluzone single-dose syringe	White	Baseline- D0	male
GSM1422071	Baseline (day 0) 5920666012_E	Fluzone single-dose syringe	Asian	Baseline- D0	male
GSM1422072	Baseline (day 0) 5920711019_I	Fluzone single-dose syringe	White	Baseline- D0	female
GSM1422073	Baseline (day 0) 5920666014_G	Fluzone single-dose syringe	White	Baseline- D0	female
GSM1422074	Baseline (day 0) 5920666012_F	Fluzone single-dose syringe	White	Baseline- D0	male
GSM1422075	Baseline (day 0) 5920711008_F	Fluzone single-dose syringe	White	Baseline- D0	male

Group Sets View in Gene Expression Browser

Name
All Samples	Default	View
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Module Analysis

Group Set
All Samples

SIDRA