SIDRA

Sample Set Annotation Tool

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Disease

Coronavirus, eneterovirus, RSV, Rhinovirus, Infleunza (1)
 H1N1 (2)
 H1N1, H3N2 (1)
 H1N1, Rotavirus (1)
 Influenza (11)
 Influenza vaccine (20)
 Influenza, Pneumonia (1)
 Rhinovirus, H1N1, H3N2 (1)
 Rhinovirus, RSV, influenza A N3N2 (1)
 RSV (1)
 RSV, Influenza (1)
 RSV, Influenza, bacterial infection (1)
 RSV, Influenza, Rhinovirus (2)

Sample Source

PBMC (16)
 Whole Blood (28)

Species

Homo sapiens (44)

Analyst

Platform

Affymetrix HG-U133A (4)
 Affymetrix HG-U133_Plus_2 (4)
 Affymetrix HT_HG-U133_Plus_PM v1 (8)
 Affymetrix HuGene 1.0 ST v1 (2)
 Affymetrix PrimeView v1 (1)
 Illumina HumanHT-12 v3 (11)
 Illumina HumanHT-12 v4 (11)
 Illumina HumanWG-6 v2 (1)
 Illumina HumanWG-6 v3 (2)

Institution

GEO (44)

Sample Set Annotation Tool

Sample Set Platform Species Disease Sample Source Sample Count  
Time series of global gene expression after trivalent influenza vaccination in humans (female cohort). GSE48023 Homo sapiens Influenza vaccine Whole Blood 417
Time series of global gene expression after trivalent influenza vaccination in humans (male cohort). GSE48018 Homo sapiens Influenza vaccine Whole Blood 431
Genome-wide profiling of whole blood from healthy adult volunteers before and after receiving non-live vaccines including seasonal influenza or pneumococcal vaccine or placebo (saline) injections II -GSE48762 Homo sapiens Influenza Whole Blood 621
Genome-wide profiling of whole blood from healthy adult volunteers before and after receiving non-live vaccines including seasonal influenza or pneumococcal vaccine or placebo (saline) injections I. GSE30059 Homo sapiens Influenza Whole Blood 72
Trivalent Inactivated Influenza Vaccine (TIV) and Live Attenuated Influenza Vaccine (LAIV) Induce Different B cell and Transcriptional Responses in Children. GSE52005 Homo sapiens Influenza vaccine Whole Blood 140
T cell responses to H1N1v and a longitudinal study of seasonal influenza vaccination - 2010. GSE58898 Homo sapiens Influenza vaccine Whole Blood 75
Global Analyses of Human Immune Variation Reveal Baseline Predictors of Postvaccination Responses. GSE47353 Homo sapiens Influenza vaccine PBMC 292
Gene expression analysis of Influenza vaccine response in Young and Old - Year 2. GSE59654 Homo sapiens Influenza vaccine PBMC 156
Gene expression analysis of Influenza vaccine response in Young and Old - Year 1. GSE59635 Homo sapiens Influenza vaccine PBMC 72
Hosts responses in critical disease caused by pandemic H1N1. GSE21802 Homo sapiens H1N1 Whole Blood 40
Transcriptional profile of PBMCs in patients with acute RSV or Influenza infection. GSE34205 Homo sapiens RSV, Influenza PBMC 101
Blood transcriptome of human bacterial and influenza A pneumonia. GSE40012 Homo sapiens Influenza, Pneumonia Whole Blood 190
Transcriptomic profiling in childhood H1N1/09 influenza reveals reduced expression of protein synthesis genes. GSE42026 Homo sapiens RSV, Influenza, bacterial ... Whole Blood 92
Influenzavirus serotype association to global whole blood transcriptional changes. GSE29385 Homo sapiens Rhinovirus, H1N1, H3N2 Whole Blood 465
Whole Blood Transcriptional Response to Pediatric Influenza Infection. GSE29366 Homo sapiens Influenza Whole Blood 31
Expression profiling of critically ill influenza and bacterial pneumonia patients, also influenza vaccination recipients. GSE20346 Homo sapiens Influenza Whole Blood 81
Host transcriptional response to influenza and other acute respiratory viral infections – a prospective cohort study. GSE68310 Homo sapiens Coronavirus, eneterovirus ... Whole Blood 880
Olfactomedin 4 serves as a marker for disease severity in pediatric Respiratory Syncytial Virus (RSV) infection. GSE69606 Homo sapiens RSV PBMC 43
Host gene expression signatures of influenza A H1N1 and H3N2 virus infection in adults. GSE52428 Homo sapiens H1N1, H3N2 Whole Blood 649
Gene expression signatures of symptomatic respiratory viral infection in adults. GSE17156 Homo sapiens Rhinovirus, RSV, influenz ... Whole Blood 113
Peripheral blood cells expression data form 7 patients with severe pdm(H1N1) influensa and 7 gender and age matched healthy controls. GSE27131 Homo sapiens H1N1 Whole Blood 21
Patient-based transcriptome-wide analysis identify interferon and ubiquination pathways as potential predictors of Influenza A disease severity. GSE61821 Homo sapiens Influenza Whole Blood 402
Transcriptomic profiling facilitates classification of response to influenza challenge. GSE61754 Homo sapiens Influenza Whole Blood 88
Time Course of Adults Vaccinated with Influenza TIV Vaccine during 2009/10 Flu Season. GSE74811 Homo sapiens Influenza vaccine PBMC 83
Time Course of Adults Vaccinated with Influenza TIV Vaccine during 2011/12 Flu Season. GSE74816 Homo sapiens Influenza vaccine PBMC 177
Time Course of Young Adults Vaccinated with Influenza LAIV Vaccine during 2008/09 Flu Season. GSE29615 Homo sapiens Influenza vaccine PBMC 83
Time Course of Young Adults Vaccinated with Influenza TIV Vaccine during 2008/09 Flu Season. GSE29617 Homo sapiens Influenza vaccine PBMC 80
Genome-wide analysis of whole blood transcriptional response to Respiratory Syncytial Virus, Influenza and Rhinovirus lower respiratory tract infection (LRTI) in children. GSE38900 (GPL6884) Homo sapiens RSV, Influenza, Rhinoviru ... Whole Blood 205
Genome-wide analysis of whole blood transcriptional response to Respiratory Syncytial Virus (RSV), Influenza and Rhinovirus lower respiratory tract infection (LRTI) in children. GSE38900 (GPL10558) Homo sapiens RSV, Influenza, Rhinoviru ... Whole Blood 36
Systems biology of vaccination for seasonal influenza in humans. GSE29619 (GPL570) Homo sapiens Influenza vaccine PBMC 27
Systems biology of vaccination for seasonal influenza in humans. GSE29619 (GPL3921) Homo sapiens Influenza vaccine PBMC 84
Time Course of Adults Vaccinated with Influenza TIV Vaccine 2009-2012. GSE74817 Homo sapiens Influenza vaccine PBMC 621
T cell responses to H1N1v and a longitudinal study of seasonal influenza vaccination - 2012. GSE64514 Homo sapiens Influenza vaccine Whole Blood 71
Systems biology of vaccination for seasonal influenza in humans. GSE29619 Homo sapiens Influenza vaccine PBMC 163
T cell responses to H1N1v and a longitudinal study of seasonal influenza vaccination - 2009. GSE58943 Homo sapiens Influenza vaccine Whole Blood 72
Time Course of Adults Vaccinated with Influenza TIV Vaccine during 2010/11 Flu Season (HIPC cohort).GSE74813 Homo sapiens Influenza vaccine PBMC 286
Gene expression analysis in children with complex seizures by influenza A (H1N1)pdm09 or rotavirus gastroenteritis. GSE50628 Homo sapiens H1N1, Rotavirus Whole Blood 32
Time Course of Adults Vaccinated with Influenza TIV Vaccine during 2010/11 Flu Season (FluCenter cohort). GSE74815 Homo sapiens Influenza vaccine PBMC 75
FACS-sorted cells from Young Adults Vaccinated with Influenza TIV or LAIV Vaccines during 2008/09 Flu Season. GSE29618 Homo sapiens Influenza vaccine PBMC 84
Genome-wide profiling of whole blood from healthy adult volunteers before and after receiving non-live vaccines including seasonal influenza or pneumococcal vaccine or placebo (saline) injections II. GSE48762_Venipuncture-Training Set. Homo sapiens Influenza Whole Blood 214
Genome-wide profiling of whole blood from healthy adult volunteers before and after receiving non-live vaccines including seasonal influenza or pneumococcal vaccine or placebo (saline) injections II. GSE48762_venipuncture set test. Homo sapiens Influenza Whole Blood 143
Genome-wide profiling of whole blood from healthy adult volunteers before and after receiving non-live vaccines including seasonal influenza or pneumococcal vaccine or placebo (saline) injections II. GSE48762_Venipuncture-Validation Set. Homo sapiens Influenza Whole Blood 30
Genome-wide profiling of whole blood from healthy adult volunteers before and after receiving non-live vaccines including seasonal influenza or pneumococcal vaccine or placebo (saline) injections II. GSE48762_Finger prick-Training Set Homo sapiens Influenza Whole Blood 185
Genome-wide profiling of whole blood from healthy adult volunteers before and after receiving non-live vaccines including seasonal influenza or pneumococcal vaccine or placebo (saline) injections II. GSE48762_Finger prick-test set. Homo sapiens Influenza Whole Blood 49
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