Sample Set Annotation Tool: Expression profiling of critically ill influenza and bacterial pneumonia patients, also influenza vaccination recipients. GSE20346

Study Design
Assay
Sample Info
Files
Info
Samples
Group Sets
Analysis

Purpose

Longitudinal Gene expression profiling of whole blood from critically ill influenza and bacterial pneumonia patients. In addition before vs 7 days post influenza vaccination volunteer samples are assayed.

Hypothesis

Experimental Design

3 groups of samples. First is bacterial pneumonia patients with 6 subjects sampled for up to 5 days. Second group is severe influenza infection with 4 subjects sampled for up to 5 days. Third group is influenza vaccination with 18 subjects sampled before and 7 days post vaccination.

Experimental Variables

Controls

Methods

Additional Information

Expected Samples:

81 Samples Loaded: 81

Species

Human (Homo sapiens)

Sample Source

Whole Blood

Disease

Influenza

Treatment Protocol

Growth Protocol

Extraction Protocol

Storage Conditions

Sample Set Spreadsheet

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Samples Preview

Sample ID	!Sample Title	tissue	group
GSM509706	bacterial pneumonia_day 1_patient A	Paxgene Whole Blood RNA Samples	Bacteria day1
GSM509707	bacterial pneumonia_day 2_patient A	Paxgene Whole Blood RNA Samples	Bacteria day2
GSM509708	bacterial pneumonia_day 3_patient A	Paxgene Whole Blood RNA Samples	Bacteria day3
GSM509709	bacterial pneumonia_day 4_patient A	Paxgene Whole Blood RNA Samples	Bacteria day4
GSM509710	bacterial pneumonia_day 5_patient A	Paxgene Whole Blood RNA Samples	Bacteria day5

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File
sampleset4000021_sampleannotations_Group.csv Sample Set Spreadsheet
sampleset4000021_sampleannotations_Group.csv Sample Set Spreadsheet

Samples Viewer / Editor

All fields are editable except the "Sample ID" column. To edit a cell, click within the cell. To edit a "date" cell, click on the calendar icon. To cancel an edit, press the ESC key.

Sample ID	!Sample Title	Tissue	Group
GSM509706	bacterial pneumonia_day 1_patient A	Paxgene Whole Blood RNA Samples	Bacteria day1
GSM509707	bacterial pneumonia_day 2_patient A	Paxgene Whole Blood RNA Samples	Bacteria day2
GSM509708	bacterial pneumonia_day 3_patient A	Paxgene Whole Blood RNA Samples	Bacteria day3
GSM509709	bacterial pneumonia_day 4_patient A	Paxgene Whole Blood RNA Samples	Bacteria day4
GSM509710	bacterial pneumonia_day 5_patient A	Paxgene Whole Blood RNA Samples	Bacteria day5
GSM509711	bacterial pneumonia_day 1_patient B	Paxgene Whole Blood RNA Samples	Bacteria day1
GSM509712	bacterial pneumonia_day 2_patient B	Paxgene Whole Blood RNA Samples	Bacteria day2
GSM509713	bacterial pneumonia_day 3_patient B	Paxgene Whole Blood RNA Samples	Bacteria day3
GSM509714	bacterial pneumonia_day 1_patient C	Paxgene Whole Blood RNA Samples	Bacteria day1
GSM509715	bacterial pneumonia_day 2_patient C	Paxgene Whole Blood RNA Samples	Bacteria day2
GSM509716	bacterial pneumonia_day 3_patient C	Paxgene Whole Blood RNA Samples	Bacteria day3
GSM509717	bacterial pneumonia_day 4_patient C	Paxgene Whole Blood RNA Samples	Bacteria day4
GSM509718	bacterial pneumonia_day 5_patient C	Paxgene Whole Blood RNA Samples	Bacteria day5
GSM509719	bacterial pneumonia_day 1_patient D	Paxgene Whole Blood RNA Samples	Bacteria day1
GSM509720	bacterial pneumonia_day 2_patient D	Paxgene Whole Blood RNA Samples	Bacteria day2
GSM509721	bacterial pneumonia_day 3_patient D	Paxgene Whole Blood RNA Samples	Bacteria day3
GSM509722	bacterial pneumonia_day 4_patient D	Paxgene Whole Blood RNA Samples	Bacteria day4
GSM509723	bacterial pneumonia_day 5_patient D	Paxgene Whole Blood RNA Samples	Bacteria day5
GSM509724	bacterial pneumonia_day 1_patient E	Paxgene Whole Blood RNA Samples	Bacteria day1
GSM509725	bacterial pneumonia_day 2_patient E	Paxgene Whole Blood RNA Samples	Bacteria day2
GSM509726	bacterial pneumonia_day 3_patient E	Paxgene Whole Blood RNA Samples	Bacteria day3
GSM509727	bacterial pneumonia_day 4_patient E	Paxgene Whole Blood RNA Samples	Bacteria day4
GSM509728	bacterial pneumonia_day 5_patient E	Paxgene Whole Blood RNA Samples	Bacteria day5
GSM509729	bacterial pneumonia_day 1_patient F	bacterial pneumonia day 1	Bacteria day1
GSM509730	bacterial pneumonia_day 2_patient F	Paxgene Whole Blood RNA Samples	Bacteria day2
GSM509731	bacterial pneumonia_day 3_patient F	Paxgene Whole Blood RNA Samples	Bacteria day3
GSM509732	Severe Influenza_day 1_patient A	Paxgene Whole Blood RNA Samples	Severe Flu day1
GSM509733	Severe Influenza_day 2_patient A	Paxgene Whole Blood RNA Samples	Severe Flu day2
GSM509734	Severe Influenza_day 3_patient A	Paxgene Whole Blood RNA Samples	Severe Flu day3
GSM509735	Severe Influenza_day 4_patient A	Paxgene Whole Blood RNA Samples	Severe Flu day4
GSM509736	Severe Influenza_day 1_patient B	Paxgene Whole Blood RNA Samples	Severe Flu day1
GSM509737	Severe Influenza_day 2_patient B	Paxgene Whole Blood RNA Samples	Severe Flu day2
GSM509738	Severe Influenza_day 3_patient B	Paxgene Whole Blood RNA Samples	Severe Flu day3
GSM509739	Severe Influenza_day 4_patient B	Paxgene Whole Blood RNA Samples	Severe Flu day4
GSM509740	Severe Influenza_day 5_patient B	Paxgene Whole Blood RNA Samples	Severe Flu day5
GSM509741	Severe Influenza_day 1_patient C	Paxgene Whole Blood RNA Samples	Severe Flu day1
GSM509742	Severe Influenza_day 2_patient C	Paxgene Whole Blood RNA Samples	Severe Flu day2
GSM509743	Severe Influenza_day 3_patient C	Paxgene Whole Blood RNA Samples	Severe Flu day3
GSM509744	Severe Influenza_day 4_patient C	Paxgene Whole Blood RNA Samples	Severe Flu day4
GSM509745	Severe Influenza_day 5_patient C	Paxgene Whole Blood RNA Samples	Severe Flu day5
GSM509746	Severe Influenza_day 1_patient D	Paxgene Whole Blood RNA Samples	Severe Flu day1
GSM509747	Severe Influenza_day 2_patient D	Paxgene Whole Blood RNA Samples	Severe Flu day2
GSM509748	Severe Influenza_day 3_patient D	Paxgene Whole Blood RNA Samples	Severe Flu day3
GSM509749	Severe Influenza_day 4_patient D	Paxgene Whole Blood RNA Samples	Severe Flu day4
GSM509750	Severe Influenza_day 5_patient D	Paxgene Whole Blood RNA Samples	Severe Flu day5
GSM509751	Vac__baseline_rep01	Paxgene Whole Blood RNA Samples	Vaccine baseline
GSM509752	Vac__day 7_rep01	Paxgene Whole Blood RNA Samples	Vaccine day7
GSM509753	Vac__baseline_rep02	Paxgene Whole Blood RNA Samples	Vaccine baseline
GSM509754	Vac__day 7_rep02	Paxgene Whole Blood RNA Samples	Vaccine day7
GSM509755	Vac__baseline_rep03	Paxgene Whole Blood RNA Samples	Vaccine baseline
GSM509756	Vac__day 7_rep03	Paxgene Whole Blood RNA Samples	Vaccine day7
GSM509757	Vac__baseline_rep04	Paxgene Whole Blood RNA Samples	Vaccine baseline
GSM509758	Vac__day 7_rep04	Paxgene Whole Blood RNA Samples	Vaccine day7
GSM509759	Vac__baseline_rep05	Paxgene Whole Blood RNA Samples	Vaccine baseline
GSM509760	Vac__day 7_rep05	Paxgene Whole Blood RNA Samples	Vaccine day7
GSM509761	Vac__baseline_rep06	Paxgene Whole Blood RNA Samples	Vaccine baseline
GSM509762	Vac__day 7_rep06	Paxgene Whole Blood RNA Samples	Vaccine day7
GSM509763	Vac__baseline_rep07	Paxgene Whole Blood RNA Samples	Vaccine baseline
GSM509764	Vac__day 7_rep07	Paxgene Whole Blood RNA Samples	Vaccine day7
GSM509765	Vac__baseline_rep08	Paxgene Whole Blood RNA Samples	Vaccine baseline
GSM509766	Vac__day 7_rep08	Paxgene Whole Blood RNA Samples	Vaccine day7
GSM509767	Vac__baseline_rep09	Paxgene Whole Blood RNA Samples	Vaccine baseline
GSM509768	Vac__day 7_rep09	Paxgene Whole Blood RNA Samples	Vaccine day7
GSM509769	Vac__baseline_rep10	Paxgene Whole Blood RNA Samples	Vaccine baseline
GSM509770	Vac__day 7_rep10	Paxgene Whole Blood RNA Samples	Vaccine day7
GSM509771	Vac__baseline_rep11	Paxgene Whole Blood RNA Samples	Vaccine baseline
GSM509772	Vac__day 7_rep11	Paxgene Whole Blood RNA Samples	Vaccine day7
GSM509773	Vac__baseline_rep12	Paxgene Whole Blood RNA Samples	Vaccine baseline
GSM509774	Vac__day 7_rep12	Paxgene Whole Blood RNA Samples	Vaccine day7
GSM509775	Vac__baseline_rep13	Paxgene Whole Blood RNA Samples	Vaccine baseline
GSM509776	Vac__day 7_rep13	Paxgene Whole Blood RNA Samples	Vaccine day7
GSM509777	Vac__baseline_rep14	Paxgene Whole Blood RNA Samples	Vaccine baseline
GSM509778	Vac__day 7_rep14	Paxgene Whole Blood RNA Samples	Vaccine day7
GSM509779	Vac__baseline_rep15	Paxgene Whole Blood RNA Samples	Vaccine baseline
GSM509780	Vac__day 7_rep15	Paxgene Whole Blood RNA Samples	Vaccine day7
GSM509781	Vac__baseline_rep16	Paxgene Whole Blood RNA Samples	Vaccine baseline
GSM509782	Vac__day 7_rep16	Paxgene Whole Blood RNA Samples	Vaccine day7
GSM509783	Vac__baseline_rep17	Paxgene Whole Blood RNA Samples	Vaccine baseline
GSM509784	Vac__day 7_rep17	Paxgene Whole Blood RNA Samples	Vaccine day7
GSM509785	Vac__baseline_rep18	Paxgene Whole Blood RNA Samples	Vaccine baseline
GSM509786	Vac__day 7_rep18	Paxgene Whole Blood RNA Samples	Vaccine day7

Group Sets View in Gene Expression Browser

Name
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Module Analysis

Group Set
All Samples

SIDRA