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In Progress
Clinical

- Study Type: Vaccine

Purpose

The objective of this study is to: 1) Characterize the immune responsiveness to administration of non-live vaccines in three cohorts of healthy adult subjects through the analysis of blood leukocytes transcriptional profiles. 2) Validate whole blood transcriptional profiles generated from standard 3mL blood draws versus 200uL blood draws obtained by finger stick. 3) Discover potential biomarkers for immune-responsiveness to non-live vaccines.

Hypothesis

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Experimental Design

A total of 621 blood samples were collected either by venipuncture (387) or finger prick (234) from four groups of healthy adults receiving either, 2009/10 seasonal influenza or 23-valent pneumococcal vaccine or placebo (saline) injections. Subjects were recruited in 3 cohorts with 4-7 individuals per group; cohort 3 was recruited for validation of the systemic day 1 immune signature in response to seasonal influenza and pneumococcal vaccination. From each subject, peripheral blood was drawn into Tempus tubes (Applied Biosystems) or obtained by finger prick into micro capillaries and then transferred into tempus reagent to lyse blood cells and stabilize RNA before storing at -80ºC until mRNA extraction. The training set for transcriptional profiling of blood obtained by venipuncture was performed in cohort 1 which included 6 healthy adult individuals receiving seasonal influenza vaccine, 6 healthy adult individuals receiving pneumococcal vaccine, and 6 healthy adult individuals receiving placebo (saline injections). The test set for transcriptional profiling of blood obtained by venipuncture was performed in cohort 2 which included 6 healthy adult individuals receiving seasonal influenza vaccine, 6 healthy adult individuals receiving pneumococcal vaccine, and 6 healthy adult individuals receiving placebo (saline injections). The validation set for confirming systemic day 1 transcriptome immune signature in response to seasonal influenza and pneumococcal vaccination was performed in cohort 3 which included 6 healthy adult individuals receiving seasonal influenza vaccine and 4 healthy adult individuals receiving pneumococcal vaccine. The training set for transcriptional profiling of blood obtained by finger prick was performed in cohort 2 and the test set in cohort 1.

Experimental Variables

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Controls

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Methods

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Additional Information

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Microarray
Illumina HumanHT-12 v3
30 Samples Loaded: 30
Human (Homo sapiens)
Whole Blood
Influenza
Sample Set Spreadsheet
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Samples Preview
Sample ID !Sample Title Age Ethnicity Gender group
GSM745184 009_179_039 _D0 [5445279045A] 26 Non Hispanic or Latino M Influenza day0
GSM745185 009_179_044 _D0 [5445279045F] 23 Non Hispanic or Latino F Influenza day0
GSM745186 009_179_040 _D1 [5445279045J] 44 F Influenza day1
GSM745187 009_179_044 _D28 [5445279045K] 23 Non Hispanic or Latino F Influenza day28
GSM745188 009_179_039 _D28 [5447320002A] 26 Non Hispanic or Latino M Influenza day28
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File
sampleset4000038_sampleannotations_Group.csv
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Sample ID !Sample Title Age Ethnicity Gender Group Day Race Vaccine Subject id Blood source Sample set
GSM745184
009_179_039 _D0 [5445279045A]
26
Non Hispanic or Latino
M
Influenza day0
0
Caucasian
Influenza
39
Vein
Validation_Vein
GSM745185
009_179_044 _D0 [5445279045F]
23
Non Hispanic or Latino
F
Influenza day0
0
Caucasian
Influenza
44
Vein
Validation_Vein
GSM745186
009_179_040 _D1 [5445279045J]
44
 
F
Influenza day1
1
African American
Influenza
40
Vein
Validation_Vein
GSM745187
009_179_044 _D28 [5445279045K]
23
Non Hispanic or Latino
F
Influenza day28
28
Caucasian
Influenza
44
Vein
Validation_Vein
GSM745188
009_179_039 _D28 [5447320002A]
26
Non Hispanic or Latino
M
Influenza day28
28
Caucasian
Influenza
39
Vein
Validation_Vein
GSM745189
009_179_041 _D28 [5447320002B]
40
Non Hispanic or Latino
M
Influenza day28
28
Caucasian
Influenza
41
Vein
Validation_Vein
GSM745190
009_179_042 _D1 [5447320002C]
26
Non Hispanic or Latino
M
Influenza day1
1
Caucasian
Influenza
42
Vein
Validation_Vein
GSM745191
009_179_043 _D1 [5447320002D]
36
Non Hispanic or Latino
F
Influenza day1
1
Caucasian
Influenza
43
Vein
Validation_Vein
GSM745192
009_179_042 _D0 [5447320002F]
26
Non Hispanic or Latino
M
Influenza day0
0
Caucasian
Influenza
42
Vein
Validation_Vein
GSM745193
009_179_039 _D1 [5447320002G]
26
Non Hispanic or Latino
M
Influenza day1
1
Caucasian
Influenza
39
Vein
Validation_Vein
GSM745194
009_179_040 _D0 [5447320002H]
44
 
F
Influenza day0
0
African American
Influenza
40
Vein
Validation_Vein
GSM745195
009_179_040 _D28 [5447320002I]
44
 
F
Influenza day28
28
African American
Influenza
40
Vein
Validation_Vein
GSM745196
009_179_042 _D28 [5447320002J]
26
Non Hispanic or Latino
M
Influenza day28
28
Caucasian
Influenza
42
Vein
Validation_Vein
GSM745197
009_179_043 _D0 [5447320002K]
36
Non Hispanic or Latino
F
Influenza day0
0
Caucasian
Influenza
43
Vein
Validation_Vein
GSM745198
009_179_041 _D0 [5447320002L]
40
Non Hispanic or Latino
M
Influenza day0
0
Caucasian
Influenza
41
Vein
Validation_Vein
GSM745199
009_179_041 _D1 [5447320003B]
40
Non Hispanic or Latino
M
Influenza day1
1
Caucasian
Influenza
41
Vein
Validation_Vein
GSM745200
009_179_044 _D1 [5447320003D]
23
Non Hispanic or Latino
F
Influenza day1
1
Caucasian
Influenza
44
Vein
Validation_Vein
GSM745201
009_179_043 _D28 [5447320003G]
36
Non Hispanic or Latino
F
Influenza day28
28
Caucasian
Influenza
43
Vein
Validation_Vein
GSM745202
009_179_048 _D1 [5445279045B]
40
Hispanic
F
Pneumovax day1
1
Caucasian
Pneumovax
48
Vein
Validation_Vein
GSM745203
009_179_048 _D28 [5445279045C]
40
Hispanic
F
Pneumovax day28
28
Caucasian
Pneumovax
48
Vein
Validation_Vein
GSM745204
009_179_046 _D1 [5445279045E]
31
Non Hispanic or Latino
F
Pneumovax day1
1
Caucasian
Pneumovax
46
Vein
Validation_Vein
GSM745205
009_179_046 _D0 [5445279045G]
31
Non Hispanic or Latino
F
Pneumovax day0
0
Caucasian
Pneumovax
46
Vein
Validation_Vein
GSM745206
009_179_046 _D28 [5445279045H]
31
Non Hispanic or Latino
F
Pneumovax day28
28
Caucasian
Pneumovax
46
Vein
Validation_Vein
GSM745207
009_179_045 _D1 [5445279045L]
45
Non Hispanic or Latino
M
Pneumovax day1
1
Caucasian
Pneumovax
45
Vein
Validation_Vein
GSM745208
009_179_045 _D28 [5447320002E]
45
Non Hispanic or Latino
M
Pneumovax day28
28
Caucasian
Pneumovax
45
Vein
Validation_Vein
GSM745209
009_179_047 _D0 [5447320003A]
23
Non Hispanic or Latino
M
Pneumovax day0
0
Caucasian
Pneumovax
47
Vein
Validation_Vein
GSM745210
009_179_047 _D1 [5447320003C]
23
Non Hispanic or Latino
M
Pneumovax day1
1
Caucasian
Pneumovax
47
Vein
Validation_Vein
GSM745211
009_179_048 _D0 [5447320003E]
40
Hispanic
F
Pneumovax day0
0
Caucasian
Pneumovax
48
Vein
Validation_Vein
GSM745212
009_179_047 _D28 [5447320003F]
23
Non Hispanic or Latino
M
Pneumovax day28
28
Caucasian
Pneumovax
47
Vein
Validation_Vein
GSM745213
009_179_045 _D0 [5447320003H]
45
Non Hispanic or Latino
M
Pneumovax day0
0
Caucasian
Pneumovax
45
Vein
Validation_Vein

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